Discussion

Sunghwan Kim | Tue, 02/21/2017 - 10:59

Hi, there. Would you please send me an email (with cc'ing the instructor at your school) to discuss this potential project further? My email is kimsungh at ncbi.nlm.nih.gov

Sunghwan,

OLCC S18 | Tue, 02/21/2017 - 08:45

Works Perfectly! Here is the syntax and definition for Google's IMPORTHTML function:

https://support.google.com/docs/answer/3093339?hl=en

IMPORTHTML
Imports data from a table or list within an HTML page.

Sample Usage
IMPORTHTML("http://en.wikipedia.org/wiki/Demographics_of_India","table",4)

IMPORTHTML(A2,B2,C2)

Syntax
IMPORTHTML(url, query, index)

url - The URL of the page to examine, including protocol (e.g. http://).

The value for url must either be enclosed in quotation marks or be a reference to a cell containing the appropriate text.
query - Either "list" or "table" depending on what type of structure contains the desired data.

index - The index, starting at 1, which identifies which table or list as defined in the HTML source should be returned.

The indices for lists and tables are maintained separately, so there may be both a list and a table with index 1 if both types of elements exist on the HTML page.
See Also
IMPORTXML: Imports data from any of various structured data types including XML, HTML, CSV, TSV, and RSS and ATOM XML feeds.

IMPORTRANGE: Imports a range of cells from a specified spreadsheet.

IMPORTFEED: Imports a RSS or ATOM feed.

IMPORTDATA: Imports data at a given url in .csv (comma-separated value) or .tsv (tab-separated value) format.

Anja Brunner | Tue, 02/21/2017 - 06:07

An area that we have been exploring at Elsevier and where we can learn a lot from users is teaching information literacy — at any level of education. We would like to hear from those of you who are thinking about novel ways to engage students in thinking about scientific information and the importance of knowing how to navigate, evaluate and use that information. You may be just beginning your training towards becoming an instructor or you may be a veteran in education with a lot of experience in managing the “roadblocks” to teaching fundamental information literacy skills. Better yet, both could work together on this project.

The Association of College and Research Libraries defines Information literacy as "a set of abilities requiring individuals to recognize when information is needed and have the ability to locate, evaluate, and use effectively the needed information.” These skills are platform-agnostic so they must be generalized, independent of where information is searched and in which discipline the information is used. So what is the skill set that an individual must learn? How can these be taught within the context of how people already search, evaluate and use information? And how can available information management systems be used in the classroom setting to teach and foment these skills? You could:

(1) pick an information management system available to you (Reaxys, PubChem, SciFinder, Google) and develop lesson plans using that platform to give students hands-on experiences that teach the skills you consider important.

(2) develop the list of skills you consider important. Then pick two or more information management systems and compare and contrast how those skills lead to optimal information searching, evaluating and using in each platform.

To this end, allow us to bring to your attention a chapter written by Librarian Judith Currano where she discusses her experiences with and approach to teaching information literacy. You will find the document uploaded to this page. Another resource that might be of use is a webinar Currano did with Damon Ridley. The link to the recorded webinar is: https://attendee.gotowebinar.com/recording/9122161258764560642

Anja Brunner | Tue, 02/21/2017 - 06:00

At Elsevier, our searches in Reaxys are influenced by our knowledge of the content, structure and search options of our product. It is clear to us, however, that Reaxys users may approach finding information in Reaxys differently. So, we want to learn from you — users of Reaxys. How would you teach others to leverage the search capabilities of Reaxys? If you take on one of the following projects (or have an idea for another similar project), our hope is that you will explore the content and functions of Reaxys and develop some best practices or “tips and tricks” that help other users to take full advantage of what Reaxys has to offer.

OPERATORS AND TRUNCATION IN SEARCHES

Most of us know the Boolean operators AND, NOT, OR. In a search, these operators offer different ways of linking together query terms and specifying how the terms relate to the hits that result. In the same way, NEAR, NEXT and PROXIMITY help refine the input criteria for a search. Truncation also serves to optimize a search strategy, opening the possibility of finding a broader range of information connected by a steadfast commonality, such as the stem of a word. Another form of truncation is entering ? or * in a formula to be searched in Reaxys.
(1) How does Reaxys interpret operators and truncations?
(2) What is the impact of these different operators on the outcome of a search?
(3) How exactly does a hit set change depending on what operators or truncation are used?
(4) What rules can one follow in their use?
(5) How are operators implemented in other search engines/databases?

Prepare a set of screencasts to explain the role of operators and truncation in search strategies.

BUILDING AN EFFECTIVE SEARCH STRATEGY

We are all used to the ease with which we enter a phrase into Google and get relevant answers to our question. At the same time, we also know that the long list of hits that emerges includes a lot of irrelevant results and we rarely go beyond the first couple of hit pages. A search for scientific information can be quite complicated. Ideally, we build a search to retrieve only relevant hits, but at the same time ensure that the answers we get are comprehensive.

A search strategy is our approach to finding answers to a question. In a natural language search engine, that approach may be figuring out the best way to phrase our question. In a user interface like Query builder in Reaxys, that involves figuring out what type of information we are looking for, what terms should we query, and how will we connect the search fields used. Another aspect of a search strategy may be any form of processing we do with the results from a search -- like combining hit sets from 2 or more searches, filtering or analyzing hit sets.

Defining a search strategy can be difficult. it is influenced by the type of question asked, the type of search engine or system used, and the knowledge context of our question -- a search for a particular reaction can be approached in different ways depending on what we know about the reaction itself.

So how do you build a search strategy? What steps do you follow? How do you inform your approach and where to you find the right query terms to use?

Pick a question and show how you can use Reaxys to optimize your search strategy to answer the question. Just to narrow the scope of the project, focus on a specific type of search:
(1) search for information on a particular chemistry topic
(2) search for a substance or group of substances that meet certain criteria
(3) search for properties of substances that would help you identify an unknown
(4) search for a reaction and figure out how to optimize it

Use screencasts to show your thought process and the steps in generating optimal sets of answers. Based on your exploration, build guidelines you can share with others for building effective search strategies.

Anja Brunner | Tue, 02/21/2017 - 05:34

Project proposal from Damon Ridley:

Hey, this video got me thinking:
https://cdn-mobapi.bloomberg.com/mobapi/v2/player/media/video/cc/WiFi/nlt1pCchSEKpzx9xDNsbEw.m3u8

What are these guys doing? What have they made? How can I find out? – well, if I cannot find their actual science, then what chemistries are involved with treating carbon dioxide as a “waste management problem”?

So, how do I search for this? Where? Things that interest me may be adsorption, or is it absorption? How about chemisorption? Can I find sorption diagrams, or enthalpy of adsorption? Desorption? Anything about electrochemical fixation of carbon dioxide?

Let’s try to answer some of these questions. Quickly!

Anja Brunner | Tue, 02/21/2017 - 05:32

Project proposal from Damon Ridley:

Arguably chemistry is more about the properties of substances than the substances themselves. Sure, we know that ibuprofen has 13 carbons, 18 hydrogens and a couple of oxygens and we know silver is an element, but the fact that ibuprofen is a great anti-inflammatory agent and silver is the most electrically conductive element really gets us chemists interested.

Most databases focus on bibliographic and/or substance/reaction records, and few focus on properties. Further those property databases that exist often cover a few properties, and few property databases allow us to perform a precise search for a property and then obtain the substances with the property.

So in this Project we are going to focus on properties – and the properties that interest you! We can approach this in various ways. One way would be to discover the main databases with property information, and then learn the tricks of the trade in searching for properties. Another way would be to pick a property and find out about the substances that have these properties.

Once we go down this path we’ll find a bunch of specific facts about specific substances, and, if our interest is in visualization of results then we could think of ways to present our data – or even make our own webpages.

So, here’s the deal. You define your project and you define its scope. The only condition is that it must focus on properties.

Sound tough? Could be! But be brave and give it a go. We’ll help you …

Stuart Chalk's picture
Stuart Chalk | Tue, 02/21/2017 - 04:58

I don't know enough about hypothes.is to help so hopefully Dr. Belford will reply.

As for XML it stands for Extensible Markup Language and has been around since the mid 1990's. The importance of XML cannot be understated as a format to organize and annotate information. XML is very similar to HTML in that it uses 'tags' to identify the meaning of information i.e. '
904-620-1938' although HTML has only a finite set of tags whereas in XML they can be almost anything. If you read later on in this module Word's .docx file format is XML and many websites including the CIR one you mention can send the data as XML rather than HTML. For more general info about XML you can go to https://www.w3schools.com/xml/xml_whatis.asp.

Stuart Chalk's picture
Stuart Chalk | Tue, 02/21/2017 - 04:46

You are correct! I could claim that this a deliberate typo to see if students are reading the material, but in fact that's not true. I will fix it right away. Thanks for reporting it...

Stuart

Sunghwan Kim | Mon, 02/20/2017 - 23:23

Some people asked about getting canonical and isomeric SMILES from ChemSpider. Currently, ChemSpider shows only one SMILES for a given molecule, but the table in the home work question has two blanks. So, if you don't find one of the two SMILES, put "N/A" or "None" in the corresponding blank.